Items where Subject is "G Genome informatics > G1 Genome informatics (General)"

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Number of items at this level: 43.

A

Ahirwar, Rajesh and Nahar, Smita and Aggarwal, Shikha and Ramachandran, Srinivasan and Maiti, Souvik and Nahar, Pradip (2016) In silico selection of an aptamer to estrogen receptor alpha using computational docking employing estrogen response elements as aptamer-alike molecules. Nature, 6 (21285). ISSN doi:10.1038/srep21285

Ahluwalia, Jasmine K and Khan, Sohrab Zafar and Soni, Kartik and Rawat, Pratima and Gupta, Ankit and Hariharan, Manoj and Scaria, Vinod and Lalwani, Mukesh and Pillai, Beena and Mitra, Debashis and Brahmachari, Samir K. (2008) Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology, 5 (117).

B

Bargaje, Rhishikesh and Hariharan, Manoj and Scaria, Vinod and Pillai, Beena (2009) Consensus miRNA expression profiles derived from interplatform normalization of microarray data. RNA, 16 (1). pp. 16-25.

Bharadwaj, Dwaipayan (2011) INDICO: the development of a resource for epigenomic study of Indians undergoing socioeconomic transition. INDICO: the development of a resource for epigenomic study of Indians undergoing socioeconomic transition, 5 (1). pp. 65-69.

Bhardwaj, Anshu and Bhartiya, Deeksha and Kumar, Nitin and Open Source Drug Discovery, Open Source Drug Discovery and Scaria, Vinod (2009) TBrowse: an integrative genomics map of Mycobacterium tuberculosis. TBrowse: an integrative genomics map of Mycobacterium tuberculosis, 89 (5). pp. 386-387.

Bhardwaj, Anshu and Scaria, Vinod and Patra, Deblina OPEN SOURCE DRUG DISCOVERY: A GLOBAL COLLABORATIVE DRUG DISCOVERY MODEL FOR TUBERCULOSIS. PubMed, 77 (1-2). pp. 22-25.

Bhardwaj, Anshu and Scaria, Vinod and Raghava, Gajendra Pal Singh and Lynn, Andrew Michael and Chandra, Nagasuma and Banerjee, Sulegan and Raghunandanan, Muthukurussi V. and Pandey, Vikas and Taneja, Bhupesh and Yadav, Jyoti and Dash, Debasis and Bhattacharya, Jaijeet and Misra, Amit and Kumar, Anil and Ramachandran, Srinivasan and Thomas, Zakir and Brahmachari, Samir K. (2011) open source drug discovery a new paradigm of collaborative research in tuberculosis drug development. Tuberculosis. pp. 479-486.

Bhartiya, Deeksha and Kapoor, Shruti and Jalali, Saakshi and Sati, Satish and Kaushik, Kriti and Sachidanandan, Chetana and Sivasubbu, Sridhar and Scaria, Vinod (2012) Conceptual approaches for lncRNA drug discovery and future strategies. Conceptual approaches for lncRNA drug discovery and future strategies, 10 (1517). pp. 1-10. ISSN 1746-0441

Bhartiya, Deeksha and Laddha, Saurabh V. and Mukhopadhyay, Arijit and Scaria, Vinod (2011) miRvar: A Comprehensive Database for Genomic Variations in microRNAs. PubMed, 32 (6). E2226-E2245.

C

Chaudhuri, Rupanjali and Kulshreshtha, Deepika and Muthukurussi Varieth, Raghunandanan and Srinivasan, Ramachandran (2014) Integrative immunoinformatics for Mycobacterial diseases in R platform. Systems and Synthetic Biology, 8 (1). pp. 27-39.

Chhabra, Ravindresh and Adlakha, Yogita K. and Hariharan, Manoj and Scaria, Vinod and Saini, Neeru (2009) Upregulation of miR-23a,27a,24-2 Cluster Induces Caspase-Dependent and -Independent Apoptosis in Human Embryonic Kidney Cells. PubMed, 4 (6). e5848.

Clark, Karl J and Balciunas, Darius and Pogoda, Hans-Martin and Ding, Yonghe and Westcot, Stephanie E and Bedell, Victoria M and Greenwood, Tammy M and Urban, Mark D and Skuster, Kimberly J and Petzold, Andrew M and Ni, Jun and Nielsen, Aubrey L and Patowary , Ashok and Scaria, Vinod and Sivasubbu, Sridhar and Xu, Xiaolei and Hammerschmidt, Matthias and Ekker, Stephen C (2011) In vivo protein trapping produces a functional expression codex of the vertebrate proteome. In vivo protein trapping produces a functional expression codex of the vertebrate proteome, 8 (6). pp. 506-515.

D

Dissanayake, Vajira H. W. and Samarakoon, Pubudu S. and Scaria, Vinod and Patowary, Ashok and Sivasubbu , Sridhar and Gokhale, Rajesh S. (2011) The Sri Lankan Personal Genome Project. The Sri Lankan Personal Genome Project, 2 (1). pp. 4-8. ISSN 2012-6077

F

Faruq, Mohammed and Scaria, Vinod and Singh, Inder and Tyagi, Shivani and Srivastava, Achal K. and Mukerji, Mitali (2009) SCA-LSVD: A Repeat-Oriented Locus-Specific Variation Database for Genotype to Phenotype Correlations in Spinocerebellar Ataxias. PubMed, 30 (7). pp. 1037-1042.

G

Ghosh, Tanay and Soni, Kartik and Scaria, Vinod and Halimani, Mahantappa and Bhattacharjee, Chaitali and Pillai, Beena (2008) MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic b-actin gene. PubMed, 36 (19). pp. 6318-6332.

H

Hariharan, Manoj and Scaria, Vinod and Brahmachari, Samir K. (2009) dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. BMC Bioinformatics, 10. ISSN 1471-2105

Harish, Nagarajan and Gupta, Rekha and Aggerwal, Parul and Scaria, Vinod and Pillai, Beena (2006) DyNAVacS: an integrative tool for optimized DNA vaccine design. PubMed, 34. W264-W266. ISSN 1362-4962

J

Jain, Sriyans and Mandal, Rahul Shubhra and Anand, Swadha and Maiti, Souvik and Ramachandran, Srinivasan (2013) Probing the amino acids critical for protein oligomerisation and protein–nucleotide interaction in Mycobacterium tuberculosis PII protein through integration of computational and experimental approaches. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1834 (12). pp. 2736-2749.

Jalali, Saakshi and Bhartiya, Deeksha and Scaria, Vinod Systematic transcriptome wide analysis of lncRNA- miRNA interactions. Systematic transcriptome wide analysis of lncRNA- miRNA interactions..

Jalali, Saakshi and Kohli, Samantha and Latka, Chitra and Bhatia, Sugandha and Vellarikkal, Shamsudheen K and Sivasubbu , Sridhar and Scaria, Vinod and Ramachandran, Srinivasan (2015) Screening Currency Notes for Microbial Pathogens and Antibiotic Resistance Genes Using a Shotgun Metagenomic Approach. PLOS .

Jayaraj, Gopal Gunanathan and Pandey, Satyaprakash and Scaria, Vinod and Maiti, Souvik (2012) Potential G-quadruplexes in the human long non-coding transcriptome. Potential G-quadruplexes in the human long non-coding transcriptome, 9 (1). pp. 1-6.

K

Kaur, Harleen and Scaria, Vinod and Maiti, Souvik (2010) Locked onto the Target”: Increasing the Efficiency of Antagomirzymes Using Locked Nucleic Acid Modifications†. “Locked onto the target”: increasing the efficiency of antagomirzymes using locked nucleic acid modifications., 49 (44). pp. 9449-9456.

Kaur, Harleen and Scaria, Vinod and Maiti, Souvik (2010) Locked onto the Target”: Increasing the Efficiency of Antagomirzymes Using Locked Nucleic Acid Modifications. PubMed, 49 (44). pp. 9449-9456.

Kumar, A and Kumar, S and Kumar, D and Mishra, A and Dewangan, RP and Shrivastava, Priyanka and Ramachandran, Srinivasan and Taneja, Bhupesh The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis. STRUCTURAL BIOLOGY, D69.

Kumar, Shiva and Ansari, Faraz A and Scaria, Vinod (2009) Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features. Virology Journal, 6 (129).

L

Latka, Chitra and Dey, Sanchita Sanchaya and Mahajan, Siddharth and Prabu, Ramachandira and Jangir, Pramod Kumar and Gupta, Chhavi and Das, Shukla and Ramachandran, Vishnampettai Ganapathysubramanian and Bhattacharya, Sambit Nath and Pandey, Rajesh and Sharma, Rakesh and Ramachandran, Srinivasan and Taneja, Bhupesh (2015) Genome sequence of a clinical isolate of dermatophyte, Trichophyton rubrum from India. FEMS , 362 (8).

M

Meli, Rajeshwari and Prasad, Abhiranjan and Patowary , Ashok and Lalwani, Mukesh K. and Maini, Jayant and Sharma, Meenakshi and Singh, Angom Ramcharan and Kumar, Gaurav and Jadhav, Vaibhav and Scaria, Vinod and Sivasubbu, Sridhar (2008) FishMap: A Community Resource for Zebrafish Genomics. FishMap: A Community Resource for Zebrafish Genomics, 5 (2). pp. 125-130.

P

Patowary , Ashok and Chauhan, Rajendra K and Singh, Meghna and Vellarikkal, Shamsudheen K and Periwal, Vinita and K P, Kushwaha and Sapkal , Gajanan N and Bondre, Vijay P and Gore, Milind M and Sivasubbu, Sridhar and Scaria, Vinod (2012) De novo identification of viral pathogens from cell culture hologenomes. De novo identification of viral pathogens from cell culture hologenomes, 5 (11).

Patowary , Ashok and Purkanti, Ramya and Singh, Meghna and Chauhan, Rajendra Kumar and Bhartiya, Deeksha and Dwivedi, Om Prakash and Chauhan, Ganesh and Dwaipayan, Bharadwaj and Sivasubbu, Sridhar and Scaria, Vinod (2012) Systematic Analysis and Functional Annotation of Variations in the Genome of an Indian Individual. HUMAN MUTATION, 00. pp. 1-8.

Periwal, Vinita and Rajappan, Jinuraj K and Open Source Drug Discovery Consortium, Open Source Drug Discovery Consortium and Jaleel, Abdul UC and Scaria, Vinod (2011) Predictive models for anti-tubercular molecules using machine learning on high-throughput biological screening datasets. Predictive models for anti-tubercular molecules using machine learning on high-throughput biological screening datasets, 4 (504).

Puniya, Bhanwar Lal and Kulshreshtha, Deepika and Mittal, Inna and Ahmed , Mobeen and Ramachandran, Srinivasan (2016) Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis. Nature, 6 (23440). ISSN doi:10.1038/srep23440

Puniya, Bhanwar Lal and Kulshreshtha, Deepika and Verma, Srikant Prasad and Kumar, Sanjiv and Ramachandran, Srinivasan (2013) Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets. Molecular BioSystems, 11.

R

Ramachandran, Srinivasan and Chaudhuri, Rupanjali (2014) Prediction of Virulence Factors Using Bioinformatics Approaches. Immunoinformatics, 1184 . ISSN 1064-3745

Rani, Jyoti and shah, Ab Rauf and Ramachandran, Srinivasan (2015) pubmed.mineR: An R package with text-mining algorithms to analyse PubMed abstracts. PubMed, 40.

Roshan, Reema and Ghosh, Tanay and Scaria, Vinod and Pillai, Beena (2009) MicroRNAs: novel therapeutic targets in neurodegenerative diseases. MicroRNAs: novel therapeutic targets in neurodegenerative diseases, 14 (23/24). pp. 1123-1129.

S

Sati, Satish and Tanwar, Vinay Singh and Kumar, K. Anand and Patowary , Ashok and Jain, Vaibhav and Ghosh, Sourav and Ahmed , Shadab and Singh, Meghna and Reddy, S. Umakar and Chandak, Giriraj Raj and Raghunath, Manchala and Sivasubbu, Sridhar and Chakraborty, Kaushik and Scaria, Vinod and Sangupta, Shantanu (2012) High Resolution Methylome Map of Rat Indicates Role of Intragenic DNA Methylation in Identification of Coding Region. First High Resolution Rat Methylome, 7 (2). pp. 1-11.

Scaria, Vinod and Hariharan, Manoj and Maiti, Souvik and Pillai, Beena and Brahmachari, Samir K. (2006) Host-virus interaction: a new role for microRNAs. Retrovirology, 3.

Scaria, Vinod and Hariharan, Manoj and Pillai, Beena and Brahmachari, Samir K. (2005) Targets for human encoded microRNAs in HIV genes. Targets for human encoded microRNAs in HIV genes. 1214-1218.

Scaria, Vinod and Jadhav, Vaibhav (2007) microRNAs in viral oncogenesis. Retrovirology, 4 (82).

Scaria, Vinod and Hariharan, Manoj and Arora, Amit and Maiti, Souvik Quadfinder: server for identification and analysis of quadruplex-forming motifs in nucleotide sequences. PubMed, 34.

Scaria, Vinod and Hariharan, Manoj and Pillai, Beena and Maiti, Souvik and Brahmachari, Samir K. (2007) Host–virus genome interactions: macro roles for microRNAs. Microreview, 9 (12). pp. 2784-2794.

Shrivastava, Priyanka and Navratna, Vikas and Silla, Yumnam and P. Dewangan, Rikeshwer and Pramanik, Atreyi and Sarika, Chaudhary and GeethaVani, Rayasam and Kumar, Anuradha and Gopal, Balasubramanian and Ramachandran, Srinivasan (2016) Inhibition of Mycobacterium tuberculosis dihydrodipicolinate synthase by alpha-ketopimelic acid and its other structural analogues. Nature, 6 (30827). ISSN doi:10.1038/srep30827

V

Vats, Abhishek and Gourie-Devi, Mandaville and Verma, Meenakshi and Srinivasan, Ramachandran and Taneja, Bhupesh and Kukreti, Ritushree and Taneja, Vibha (2015) Identification of L84F mutation with a novel nucleotide change c.255G > T in the superoxide dismutase gene in a North Indian family with amyotrophic lateral sclerosis. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 17.

This list was generated on Sun Sep 20 20:16:30 2020 IST.